This paper covers the basics of mass spectrometry instrumentation and introduces the interpretation of mass spectra. By convention, m is the numerical value for the mass. Mar 26, 2008 with contributions from noted experts from europe and north america, mass spectrometry instrumentation, interpretation, and applications serves as a forum to introduce students to the whole world of mass spectrometry and to the many different perspectives that each scientific field brings to its use. Interpretation of infrared spectra, a practical approach. Gaschromatographymass spectrometry gc ms interpretation. Reviewed in the united states on february 22, 2011. Interpretation of msms mass spectra of drugs and pesticides wilfried m. Interpreting protein mass spectra is a handson laboratory guide for a wide range of researchers investigating the structures of proteins and peptides.
The source where ionisation of molecules and ion fragmentation occurs. A foundation of knowledge on interpretation of mass spectra an overview of analytical instrumentation, analytical considerations and perspectives. Examine spectrum for peak clusters of characteristic isotopic patterns. The fundamental concepts of ionization, fragmentation, and rearrangement of ions as found in mass spectra. Pdf interpretation of msms mass spectra of drugs and. Conventionally acquired mass data files are resorted from chronological to primarily ion mass order and secondarily to chronological order within each ion mass grouping. Analysis of mass spectrometry data for protein identi cation in complex biological mixtures by. In the mass spectrum, the heaviest ion the one with the greatest mz value is likely to be the molecular ion. The fundamental di culty in the analysis of mass spectrometry. Mass spectra is a plot of relative abundance against mass tocharge ratio.
Also, the students carry out a mass spectrometry experiment and learn to interpret the resulting mass spectra. Analysis of mass spectrometry data for protein identi. It will be your resort to maintain downloading guide interpretation of mass spectra, by fred w. The outcome has been widespread use of complex instrumentation, often as a walk up service, by staff with little education or training relevant to the task. Interpretation of ms ms m ass spectra of drugs and pesticides wilfried m. Mass spectroscopy, when coupled with either gas or liquid chromatography, can analyze a complex mixture that an nmr or ir could not.
Jan 06, 2017 provides comprehensive coverage of the interpretation of lcmsms mass spectra of 0 drugs and pesticides. This simplified list will help you to interpret many spectra, however there are other mechanisms of fragmentation which cannot be covered in this brief tutorial. Basic rules for the interpretation of atmospheric pressure. Basic interpretation of mass spectra is discussed, with emphasis on the types of chemical compounds commonly identified in forensic laboratories, particularly controlled substances and arson accelerants. Api mass spectra of small molecules written with the style primarily intended for beginners and lowexperienced researchers with the mass spectra interpretation. Mass spectrometry and interpreting mass spectra compound. We also we also added a new chapter with reference data for 19 f and 31 p nmr spectroscopy and, in.
Interpretation of mass spectral data 1 the molecular ion. Mass spectrometry fragmentation patterns chemistry. A mass spectral analyzer system providing automated discovery, deconvolution and identification of mass spectrum is taught. Metzger, university of oldenburg electron ionization and fragmentation of organic ions and interpretation of ei mass spectra, j. Aists spectral database, which includes 1 h and c nmr spectra, as well as ir, uvvis, and mass spectra. Protein identi cation using mass spectrometry is another variant of such a general problem. The main aim of the guide is to enable those unfamiliar with mass spectrometry to generate mass spectra. You might wish to refer to the table of bond dissociation energies when attempting problems involving the interpretation of mass spectra. The molecular fragmentation peaks in the mass spectrum can give clues as to the substructure of the molecule. It is commonly used for the identification of organic compounds from electron ionization mass spectrometry. This page looks at how fragmentation patterns are formed when organic molecules are fed into a mass spectrometer, and how you can get information from the mass spectrum. Analysis and interpretation of mass spectral data american. Interpretation of infrared spectra, a practical approach 3 are distributed throughout the molecule, either localized within speci. Well, with molecular ions or fragment ions that contain chlorine atoms, peaks can be seen at two different mass values owing to the significant abundance of the two isotopes.
Ei spectra are rich in fragments thus useful in structure determination thro interpretation. Interpretation of mass spectra, 4th edition, by fred mclafferty, published by university science books, 0935702253. This rule is a result of nitrogens unique property. The molecular fragmentation peaks in the mass spectrum. Sample introduction may involve individual samples or may follow online chromatographic separation. Ebook pdf download interpretation of mass spectra, by. Nitrogen has an even atomic mass but bonds with three other. Gas chromatographymass spectrometry gc ms interpretation of ei spectra jeremy keirsey ccic msp.
Ei spectra ei spectra are rich in fragments thus useful in structure determination thro interpretation. Provides a general discussion on the fragmentation of evenelectron ions protonated and deprotonated molecules in both positiveion and negativeion modes. Set ms1 to filter fragment of interest, dissociate further in q collisionally and mass analyze by scanning with ms2. The dispersion system, the analyser, which ensures ion separation by mass charge ratio. Data system mass detector analyzer vacuum system source inlet region more precisely mass spectrometry determines the mass of a molecule. Provides a general discussion on the fragmentation of evenelectron ions. Us54536a mass spectra interpretation system including. The focus is on the interpretation of structural information gathered through electrospray ionization mass spectrometry. The results are typically presented as a mass spectrum, a plot of intensity as a function of the mass tocharge ratio. At the end of the chapter, acquisition of mass spectrum is discussed. Interpretation of tandem mass spectra obtained from cyclic.
Interpretation nists webbook which includes ir, uvvis and mass spectra of many organic compounds aists spectral database, which includes 1 h and c nmr spectra, as well as ir, uvvis, and mass spectra. Interpretation of mass spectra, say the authors, aims at correlating ion dissociation mechanisms on a much broader scale, with emphasis on basic attributes such as ionization energies, proton affinities, and bond dissociation energies. The chapter includes an introduction to the main ionisation techniques in mass spectrometry and the way the resulting fragments can be. Mass spectrometry ms interpretation general interpretation strategies. Nists webbook which includes ir, uvvis and mass spectra of many organic compounds. Dec 19, 2012 shows you how to get the information out of a mass spectrum and use it to help suggest the identity of an unidentified molecule. Interpretation of mass spectra of organic compounds 1st edition. That isnt a problem you are likely to meet at alevel. At high energies, the ionising electron beam can fragment the molecule by cleaving particular bonds. Infrared spectroscopy identifying functional groups 4. Interpretation of msms mass spectra of drugs and pesticides. Provides comprehensive coverage of the interpretation of lcmsms mass spectra of 0 drugs and pesticides.
Mclafferty sooner you get guide interpretation of mass spectra, by fred w. So far, weve looked at how chemists can determine the presence of particular bonds. Mass spectra can be quite complicated and interpretation difficult. Mass spectrometry mass spectrometry is the most accurate method for determining the molecular mass of the compound and its elemental composition. Mass spectrometry is a powerful technique in analytical chemistry that was. A simple mass spectrum is represented by a two dimensional bar plot, the height of. The fragmentation pattern contains clusters of peaks 14 mass units apart which represent loss of ch2nch3.
The reliable identi cation of proteins from mixtures using mass spectrometry would provide an important tool in both biomedical. If good inferences could be made, use the remainder of the mass spectrum to try to elucidate structural features or isomerism. Indepth understanding of lcms and gcmsbased applications. For the fourth in the analytical chemistry series, we turn to mass spectrometry. Interpretation of mass spectra of organic compounds 1st.
Chapter 2 fragmentation and interpretation of spectra 2. The spectrophotometer should be calibrated so that the bands are observed at their proper frequencies or wavelength. Pdf download interpretation of mass spectra, by fred w. Interpretation of mass spectra of organic compounds. Jul 31, 2014 interpretation of spectra spectral requirements the spectrum must be adequately resolved and of adequate intensity. The focus is on the interpretation of structural information gathered through electrospray ionization mass spectrometry esims. Isotopic percentage and nominal mass calculation are also.
Download pdf interpretation of mass spectra, by fred w. Molecular ion peaks are present, possibly with low intensity. Pdf on jun 7, 2017, teodor octavian nicolescu and others published interpretation of mass spectra find, read and cite all the research you need on. The mass to charge ratio mz is used to describe ions observed in mass spectrometry. Practical class exercises will apply fundamental principles used to interpret mass spectra. The main aim of the guide is to enable those unfamiliar with mass spectrometry to generate mass spectra that are fit for purpose, primarily for qualitative analysis. Mar 27, 2015 general rules for interpretation of mass spectra.
Interpretation of infrared spectra, a practical approach 1 interpretation of infrared spectra, a practical approach john coates coates consulting, newtown, usa 1 introduction 1 2 the origins of the infrared spectrum 2 3 spectral interpretation. It will be your resort to maintain downloading guide interpretation of mass spectra. Matrixassisted laser desorptionionization mass spectrometry in peptide and protein analysis j. Provides comprehensive coverage of the interpretation of lcmsms mass spectra of 0 drugs and pesticides provides a general discussion on the fragmentation of evenelectron ions protonated and deprotonated molecules in both positiveion and negativeion modes this is the reference book for the interpretation of msms mass spectra of small organic molecules covers related therapeutic classes. Journal of the american society for mass spectrometry 2015, 26 10, 17681779. The fundamental concepts of ionization, fragmentation, and rearrangement of ions as found in mass spectra are covered in some detail, along with the rectangular array and interpretation. Interpreting esi spectra the y axis is labeled relative intensity. In order to observe such electronic transitions, it is necessary to apply energy in the form of visible and ultraviolet radiation equation 2. Mass spectral interpretation is the method employed to identify the chemical formula, characteristic fragment patterns and possible fragment ions from the mass spectra.
Interpreting mass spectra gcms data analysis chemistry net. Intensity of peaks depends on the stability of the ion. Nowadays standard libraries could include a few hundred thousands spectra. Structural and sequence information from mass spectrometry. The chapter includes an introduction to the main ionisation techniques in mass spectrometry and the way the resulting fragments can be analysed. Analysis of mass spectrometry data for protein identi cation. In order to interpret the mass spectrum, one should attain an understanding of the ionisation process. With contributions from noted experts from europe and north america, mass spectrometry instrumentation, interpretation, and applications serves as a forum to introduce students to the whole world of mass spectrometry. Analysis of such fragments provides information on the structure of molecules. They stress that the most important part of learning how to interpret unknown mass spectra.
May 07, 2015 chlorine can have atoms with a mass of 35, or a mass of 37. The fundamental concepts of ionization, fragmentation, and rearrangement of ions as found in mass spectra are covered in some detail, along with the. It is also called as positive ion spectra or line spectra. Pdf on jun 7, 2017, teodor octavian nicolescu and others published interpretation of mass spectra find, read and cite all the research you need on researchgate. Practical skills leading to the generation of reliable information for research, development, and manufacturing. The molecular weight of a pure compound from the identification of the parent peak. Interpreting mass spectra gcms data analysis gcms combines the advantages of both techniques the high resolving power and the speed of analysis of gc with the qualitative and.
For the analytical chemist, a mass spectrum is useful for two applications. A few compounds have mass spectra which dont contain a molecular ion peak, because all the molecular ions break into fragments. This peak if it appears will be the highest mass peak in the spectrum. Mass spectrometry ms is an analytical technique that measures the mass tocharge ratio of ions. You need to understand mass spec well for it to be of good use. Mass spectroscopy determining molecular weight, structural elements, molecular formula the various spectroscopies are the primary method. Interpretation of mass spectral data 1 the molecular ion the molecular ion in an e. Article views are the countercompliant sum of full text article downloads since november 2008 both pdf and html across all institutions and individuals. Aug 08, 20 interpreting mass spectra gcms data analysis gcms combines the advantages of both techniques the high resolving power and the speed of analysis of gc with the qualitative and quantitative analytical capabilities of the ms down to the ppb level. Interpretation of mass spectra of organic compounds outlines the basic instrumentation, sample handling techniques, and procedures used in the interpretation of mass spectra of organic compounds. In this work, we propose applicationspeci c machine learning algorithms to address this problem.